Scaffold Ga0075461_10000208

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10000208
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15829
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F037732	Metagenome / Metatranscriptome	167	Y
F058137	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_1000020812	F058137	AGGAGG	VKKIRSVRVSDQLWARAKAKARSEGKTISEVIVDFLKEFVK*
Ga0075461_1000020830	F009529	AGGAGG	LSECLVCRRQVEGQCRSCFGRLRAILQELPTLQFEAGFYLEPSRTGSGMATTERSIGINVNALDFHLAIDLLGVLHAWESIIRKDRNLTPPALVRAENNRDLEVQATCDFHLAHLSWTLTQEWALDFAGELYGLHARGRAATKKFKEQARRIPCPTDDCEKFVVIDVEQLNQDVTCFGCKQSWSVLRLVALAMSNPNRRFFLDVEALSAWLQITPKEIYRLIKKFDIEKRGSTYDLQAIMKARQAV*
Ga0075461_1000020832	F037732	GGAG	MLNISVSIGDVETELVTDNNLSFDAIESLLNRAVAATLQSYLSLPIEDRLASFGTDEDDEEEFGE*