NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101571_10580739

Scaffold Ga0101571_10580739


Overview

Basic Information
Taxon OID3300006627 Open in IMG/M
Scaffold IDGa0101571_10580739 Open in IMG/M
Source Dataset NameSoil microbial communities from the Leymus chinensis steppe, China - after adding 28 g N m- 2, yr-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Namethe Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031996Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0101571_105807391F031996N/AFFIVCSVILILTGVAQFLVRPRKDGESALEKVLNRSAMTALLSVTIGVLGLLLGLGIVKMPRL*

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