Scaffold Ga0101438_101290

Overview

Basic Information

• Taxon OID: 3300006615
• Scaffold ID: Ga0101438_101290
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ04 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21070
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101438_10129010	F008747	N/A	MAPVEESIARPAGSEGETAQDVGVPPLTVGVTVVIAVPFVRVCEFGL*
Ga0101438_10129012	F008747	AGG	VTAVGVPLIAPVDESNDKPTGREGETDQDVMVPPLTVGVVVVIAVPFVNVNEFGL*
Ga0101438_10129013	F008747	AGGA	VTAVGVPLIAPVEASMASPAGSDGETDQVVTVPPEEVGVAVVIVVPFVSVNVLGL*
Ga0101438_10129014	F008747	AGG	VIAVGVPLSAPVDESSAKPAGREGLIDQDVTSPPLLDGVTVVIAVPLVKAKELVE*
Ga0101438_10129015	F008747	AGGAGG	VTAFGVPLMAPVEESKDRPEGRDGDTDQDVIVPPFTVGVTVVMAVPLVRVNEFGL*
Ga0101438_10129016	F008747	AGG	VTAVGVPLIAPLDESSDKPAGSDGETDQDVIVPPFTVGVTVVIAVPLVSVNELGL*
Ga0101438_10129017	F008747	AGGA	VIAVGVPEIAPVDESRESPAGSPGDTDHEVTVPPLNVGVVVVIAVPVVKVNEFGL*
Ga0101438_10129019	F008747	N/A	VAEEDTAVGVPLIAPVEESKDKPAGKEGETDHEVTVPPVIDGVTVVIAVPLVNVNEFGL*
Ga0101438_10129021	F008747	AGG	VTAVGVPLIAPVDESNDKPAGREGETDHEVIAPPFAVGVAVVMVVPLVREYEL*
Ga0101438_10129022	F008747	AGGA	VIAVGVPDIAPVEASKDKPAGSDGETDQEVIVPPFTVGVTVVIAVPLVRENELGL*
Ga0101438_10129024	F032291	AGGA	VTAVGVPLIAPVDESKDKPAGSEGDTDHEVMVPPLTVGVVVVIAVPLVSENELGLYVSDDGATSLTTMVTVAVSLPPVLLAVMV*
Ga0101438_10129025	F032291	AGG	MAEGVPEIAPVDESKDKPAGSDGDTDQEVIVPPLTVGVTVVIAEPLVSVNELGLYAKDDGATSLMTMVTVAVSLPPVLLAVMV*