NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079098_1033517

Scaffold Ga0079098_1033517


Overview

Basic Information
Taxon OID3300006598 Open in IMG/M
Scaffold IDGa0079098_1033517 Open in IMG/M
Source Dataset NameActive sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_01_SludgeMetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21233
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameIllinois, USA
CoordinatesLat. (o)40.1191Long. (o)-88.1952Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080199Metagenome / Metatranscriptome115N
F088950Metagenome / Metatranscriptome109N
F090569Metagenome / Metatranscriptome108Y
F103495Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0079098_103351723F088950GGCGGMDIDGVLKELANFIEDKVPELKNKVTTIYPESERFAPPTVVIDIVAGRETLIIDGTKTHELVRIAIISDKKSEINRIFKLITDAFLDYGRELTLCIYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRR*
Ga0079098_103351724F080199GGAGMKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIVSQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL*
Ga0079098_10335175F090569AGGTGGMGVEGIYTGEIQEKSKVENVYFNLVDNGEFVTLELVDENGNHVICGNICNIGKKSGRIGTCCNVNCELGFTLDSYGRVIVD*
Ga0079098_10335177F103495GGAMIYMDNLLQFLIDSGLLYMIISTLLTVGIGFIVGKGVSFKEIQDIIKVVDESYKDGYISPEEAQKIYEEITDVIGQDWYIRLFNIIKR*
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