NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074053_11885522

Scaffold Ga0074053_11885522


Overview

Basic Information
Taxon OID3300006575 Open in IMG/M
Scaffold IDGa0074053_11885522 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048291Metagenome / Metatranscriptome148Y
F074854Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0074053_118855221F048291GGAGMDLTNITARSLARRSSRRQFFKWLGAGSLGTGLFLTRTGVSLGAVTSCVGCGGGPCNDCWSPAPVCEQIGF
Ga0074053_118855222F074854GGAGGMKDGSIFLLSRQVKGDHGESYMQNVTVFAPSAAQAKAIVDDQFAAFRQGARGHERAYQALPKFSVERVSLEDYKMITAGVTT*

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