Basic Information | |
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Taxon OID | 3300006499 Open in IMG/M |
Scaffold ID | Ga0100371_100127 Open in IMG/M |
Source Dataset Name | Human stool microbial communities from NIH, USA - visit 1, subject 159268001 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 86301 |
Total Scaffold Genes | 113 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (23.89%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F032312 | Metagenome / Metatranscriptome | 180 | N |
F044555 | Metagenome / Metatranscriptome | 154 | N |
F060985 | Metagenome / Metatranscriptome | 132 | N |
F064817 | Metagenome | 128 | N |
F094005 | Metagenome / Metatranscriptome | 106 | N |
F101357 | Metagenome / Metatranscriptome | 102 | N |
F105375 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0100371_10012776 | F094005 | N/A | MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETPEKVITLDKKLKKLIEKLNE* |
Ga0100371_10012777 | F032312 | N/A | MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS* |
Ga0100371_10012778 | F060985 | GGA | MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIKGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD* |
Ga0100371_10012784 | F044555 | N/A | MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNIPMVPDLEKPIEIQVSTIRRIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR* |
Ga0100371_10012792 | F101357 | AGG | MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDAFYNYSNASNIHYEGGKFPSMLTIQLFNLEF* |
Ga0100371_10012795 | F105375 | N/A | MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV* |
Ga0100371_10012797 | F064817 | N/A | MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI* |
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