3300006499: Human stool microbial communities from NIH, USA - visit 1, subject 159268001

Overview

Basic Information

• IMG/M Taxon OID: 3300006499
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052510 | Ga0100371
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159268001
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147067976
• Sequencing Scaffolds: 7
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F068811	Metagenome	124	N
F068855	Metagenome	124	N
F076189	Metagenome	118	N
F094005	Metagenome / Metatranscriptome	106	N
F099269	Metagenome	103	N
F101356	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100371_100127	Not Available	86301
Ga0100371_101261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	19167
Ga0100371_102579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9619
Ga0100371_107070	All Organisms → cellular organisms → Bacteria	3193
Ga0100371_107334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3072
Ga0100371_119578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1095
Ga0100371_126203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	805

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100371_100127	Ga0100371_10012776	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETPEKVITLDKKLKKLIEKLNE*
Ga0100371_100127	Ga0100371_10012777	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0100371_100127	Ga0100371_10012778	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIKGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0100371_100127	Ga0100371_10012784	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNIPMVPDLEKPIEIQVSTIRRIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0100371_100127	Ga0100371_10012792	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDAFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0100371_100127	Ga0100371_10012795	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0100371_100127	Ga0100371_10012797	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0100371_101261	Ga0100371_1012612	F068855	VPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0100371_102579	Ga0100371_10257910	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSDTAPSKSCA*
Ga0100371_106781	Ga0100371_1067817	F101356	MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0100371_107070	Ga0100371_1070702	F099269	MRRPPFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGVLISDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0100371_107334	Ga0100371_1073343	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSALYREFAELSAYFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0100371_119578	Ga0100371_1195782	F068811	MDQDGSEHNICSTREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK*
Ga0100371_126203	Ga0100371_1262032	F047125	MDVVLLLMVLGVMLRGFWAADALDHMRKEILQQEGKRRGWWS*