NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100374_100399

Scaffold Ga0100374_100399


Overview

Basic Information
Taxon OID3300006498 Open in IMG/M
Scaffold IDGa0100374_100399 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43772
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (94.64%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F051214Metagenome144N
F074985Metagenome119N
F081456Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0100374_10039914F074985GAGMTRSVISEEDIVELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0100374_10039915F036281AGGAGMITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRNTMTNEKGHQTYDWVLENVEWADDTIRYF*
Ga0100374_10039916F027205AGGAVASRLIVSADDILKAVKESEEFERKALSEARKRDRDEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*
Ga0100374_10039919F043991GAGVSKKNPSVIDYFDLNGDLNEEAYEFEEVKLEDYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0100374_10039920F051214AGGAGMPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYRDKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0100374_10039922F018385GGAGMAEYENQWGPYKEHSIEKDRDPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGCCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEMK*
Ga0100374_10039933F081456AGGAGMFEEPPIYYILISLIFLIVFGAIAFATWLVWLTPIAFMAKLVMTAIGFLLCAITVILYTISAD*

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