3300006498: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683

Overview

Basic Information

• IMG/M Taxon OID: 3300006498
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052511 | Ga0100374
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151863366
• Sequencing Scaffolds: 16
• Novel Protein Genes: 27
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter	1
All Organisms → cellular organisms → Bacteria	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F071327	Metagenome	122	N
F074985	Metagenome	119	N
F078842	Metagenome	116	N
F081454	Metagenome	114	N
F081456	Metagenome	114	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100374_100013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	223347
Ga0100374_100019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter	208104
Ga0100374_100399	All Organisms → cellular organisms → Bacteria	43772
Ga0100374_100408	All Organisms → cellular organisms → Bacteria	42730
Ga0100374_100443	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	40315
Ga0100374_100623	Not Available	31051
Ga0100374_101183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	17801
Ga0100374_102127	All Organisms → cellular organisms → Bacteria	10682
Ga0100374_102419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	9479
Ga0100374_103258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	7183
Ga0100374_103573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6590
Ga0100374_103866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	6131
Ga0100374_105412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	4457
Ga0100374_106444	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3754
Ga0100374_111251	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2120
Ga0100374_122400	Not Available	998

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100374_100013	Ga0100374_100013202	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRVVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQGEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFAAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0100374_100019	Ga0100374_10001971	F085821	MNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTRRQILEQDNGKHDEAYIDEWVKANVNKTLSTIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKIK*
Ga0100374_100399	Ga0100374_10039914	F074985	MTRSVISEEDIVELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0100374_100399	Ga0100374_10039915	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRNTMTNEKGHQTYDWVLENVEWADDTIRYF*
Ga0100374_100399	Ga0100374_10039916	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRDEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*
Ga0100374_100399	Ga0100374_10039919	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEEVKLEDYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0100374_100399	Ga0100374_10039920	F051214	MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYRDKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0100374_100399	Ga0100374_10039922	F018385	MAEYENQWGPYKEHSIEKDRDPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGCCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEMK*
Ga0100374_100399	Ga0100374_10039933	F081456	MFEEPPIYYILISLIFLIVFGAIAFATWLVWLTPIAFMAKLVMTAIGFLLCAITVILYTISAD*
Ga0100374_100408	Ga0100374_10040825	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN*
Ga0100374_100408	Ga0100374_10040844	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0100374_100443	Ga0100374_1004434	F051211	MKAKKAIRIFKKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRIFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKLFRGNPKEFYIAIDKWLADTRAHHSS*
Ga0100374_100623	Ga0100374_10062344	F084362	MSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0100374_100623	Ga0100374_1006236	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDDRQRVMNTLSELKEVLDQEAIAYQIENDLQLI*
Ga0100374_101183	Ga0100374_10118317	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDIVVPYKQSTQMGDIEMIMNIKYKFLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0100374_102127	Ga0100374_1021277	F030786	MKRTRIHKVVFQMLVVMVVTGSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0100374_102419	Ga0100374_1024193	F097526	MTENSTMATTIYTQDDYCRLCERLNDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAAEFEQAGRNGHPDPAELERRERWDSHCKRLQQHARMAGDQITNADNAAVSRLTKQCEKNGSRDTAIPSPHDDGYGFTAGLRDFPLNASQTALLWRMAVLTIAEMTDTTPELTAHYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLLSAAKAYENRNTDNRLEDAMTKP*
Ga0100374_102795	Ga0100374_1027951	F061927	MKNPIFILSAMLILGACSSDSTQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSN
Ga0100374_103258	Ga0100374_1032584	F101358	LTQPITTDGMPQERATHPDTYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIINKDDVTLVRMTKLVNRSNIYQLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYDHLGGDSARQLVGSVAAKASGEVDNSPLVQRALECIR*
Ga0100374_103573	Ga0100374_1035733	F040685	MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0100374_103573	Ga0100374_1035734	F051212	MKKFFFIFVLCWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSKLYNHLNLKK*
Ga0100374_103573	Ga0100374_1035736	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNRK*
Ga0100374_103866	Ga0100374_1038666	F063778	MPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIDAYLKNCQTSINDAIGNIEAIPLDPPPED*
Ga0100374_105412	Ga0100374_1054125	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAESYSPEAKKTYDEAVREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGCDFLEYIKNLSSSVFCDNLQKALVRCSDSHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVDS*
Ga0100374_106444	Ga0100374_1064443	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASEFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQTLTLKIVVIALATALLFEYAYPWRLIFG*
Ga0100374_111251	Ga0100374_1112513	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQEIHQKTEKIAECSDKVCYHKVHLQTKSDCDCGFLCTLNYFYILPEKPQTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0100374_122400	Ga0100374_1224001	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*