Scaffold Ga0100376_10271

Overview

Basic Information

• Taxon OID: 3300006491
• Scaffold ID: Ga0100376_10271
• Source Dataset Name: Human anterior nares microbial communities from NIH, USA - visit 1, subject 763901136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Respiratory System → Nasopharyngeal → Anterior Nares → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023843	Metagenome / Metatranscriptome	208	Y
F046363	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100376_102713	F023843	GGTGG	MASSGKIEIEKFNGQSFELWKLKMEDLLVDKDQWIAVDPGTKPT*
Ga0100376_102714	F046363	N/A	MVFRSMVLDASACINMYCNIERNIMKNQARSLGFEIQWEISVYMCFMCYALAFYFSCDLEFVCR*