Scaffold Ga0100250_100124

Overview

Basic Information

• Taxon OID: 3300006488
• Scaffold ID: Ga0100250_100124
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34057
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100250_10012412	F043991	GAG	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA*
Ga0100250_10012413	F051214	AGGAG	MPGKIVANDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0100250_10012423	F067847	AGGA	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL*
Ga0100250_1001248	F036281	AGGAG	MITLIKVDEGPVDIYELRMKYLAKLKETDGVMLPKFIYRNKELFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAKERKTYNAKEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0100250_1001249	F027205	AGGA	VASRLIVTADDILKAVKESEEFEKKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*