Scaffold Ga0070744_10158614

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10158614
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 648
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027537	Metagenome	194	Y
F082791	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_101586141	F027537	N/A	DLTPMNNMKMNAMIKDPHKSKEEDPKRDMNATYMKSDVRADVKNGGGIDMSKVKDAPKMQTAMKKINAMYKTEKYHDTKPGSIQDVVNQMYHAEHRLVAVEDKKLDDMIKQYMSKGGTITKLPPALQKGSKPSDMKKHQVGAKGVVKSMKMKEVREFISTYNSHFLTNFKAEELLER*
Ga0070744_101586142	F082791	GAG	MKYNKTFREALKEVGFNLREDGHTDVASAVRQCKTTI