Scaffold Ga0070744_10024718

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10024718
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1780
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F074876	Metagenome / Metatranscriptome	119	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100247183	F012975	AGGA	VLNLTLKGVEVFIEKSKTKNQESYWDNYDLMIWKQDTSGFTNIKGLFRKDTWGVAERISANNEGIWKLPAKYVKHFK*
Ga0070744_100247185	F000473	AGGAG	MASNFFDDKHFKYGINQFTGEPNKPVFYNETMAKKIKEIKAPVIGLQMDIAKYPDFLAIKLYEDNFIQYQGIKKEMVIDYVLKVRKVIESFGVRCELVGVPSERVL*
Ga0070744_100247186	F074876	N/A	VKEYYEIINIVYIHDLRLYGTIEKMGTYASMVKYTKDGIDYKELIENDEFAIIDEIVFEHVEEEK*
Ga0070744_100247187	F080048	GAGG	MEKILCYSCNKSKNKLNVKKSILLPINLFMCETCITNKMEPRWVV