Scaffold Ga0070744

Basic Information
Taxon OID	3300006484 Open in IMG/M
Scaffold ID	Ga0070744_10002938 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006484 Open in IMG/M

Scaffold ID

Ga0070744_10002938 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5139
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5139

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005452	Metagenome / Metatranscriptome	400	N
F029109	Metagenome	189	Y
F047681	Metagenome	149	N
F105189	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100029381	F105189	GAGG	MAGIPKVKITFDADFDDLKKGISGAQNEVEGFGSKVSAFGKKAAAGFALAAAAAVAY
Ga0070744_100029382	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLIQTLNALDKETQGRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLESMLTPRDRLIRVDLGGPKKVGRPYGGTASKSGKGKKVGRSAAPAGALLWGSEYGSHSGVDRAGRRYSNRFKAPQKRSGYWINDAVDFYTPIVAKEYIAVVQGIINDLRLK*
Ga0070744_100029385	F005452	N/A	MTIEADIRTPLQTTLSTIAANVYNGIPEAMTSPSIVLVPDSPYLESTLINGSTTKVKINFLVTGVVGYSSNAAALTNLEDLMIEIISTMPAGYVVGDVSSPTPLEVGTGKFLTSDLQVSTYYTD*
Ga0070744_100029386	F047681	AGAAGG	MPQIVTAAELRSILGVSVSLYSNAYLEQMIESAELTILPLLTGYQSAVTEVFVENSIAYYGTQRVNYFVPGQDVVITGCGIYDATVTVTNDRIAPMVFTSATGEADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVAVEVFQSVTAPGNQIMSDAFQPSPFVLGRSLTSRIVGLLGPFLEVETMCL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070744_10002938

Overview

Ecosystem & Geography

Associated Families

Sequences