Scaffold Ga0070744_10000976

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000976
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8474
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F025747	Metagenome / Metatranscriptome	200	Y
F031101	Metagenome	183	Y
F033808	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000097612	F031101	GGCGG	MNDLFWYKIKLREAVSTTGMENGWDDEKCKEVFDQLMGKYLVSKGLK*
Ga0070744_100009762	F033808	GAGG	MEMFLLGMMLGFIIGYPVGLFIDKLDKRERAKNGR*
Ga0070744_100009766	F025747	AGGAGG	VPDLNEFLYSEKVYPPELERLGGRKPCSKCDKDSEEYFWDAMSLTMSWECPDGHKNSFKVN*
Ga0070744_100009769	F004006	AGGAG	VTDNIEGLVTSISINQVLVAILEEHGKIVVPTLRFLDAGATEKELVIDYDENGPSFTFSLRDKNEQQ*