Scaffold Ga0070744

Basic Information
Taxon OID	3300006484 Open in IMG/M
Scaffold ID	Ga0070744_10000797 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006484 Open in IMG/M

Scaffold ID

Ga0070744_10000797 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9326
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9326

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F097357	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000079710	F006623	AGGTGG	MNLQNYRLEPNPNVPGDWIVFGDIYDNEGNLLGTFGSDGTSVFGWWVLQDAEFQQSYSSQFSAIMAQEIVAGTAE*
Ga0070744_1000079711	F001733	AGAAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTGVNALKVGK*
Ga0070744_1000079713	F039641	N/A	MIPAAYSTALKNAIQAYSYADRVAIWRTVNQADGIGGVSQHWIQVAEIRGTISNTGDTEGVVGGMIEQSGTWTLTCSPDIEVRADDRIYTSGNPQNLSPYYECIGSDYGHTNAVSQTIALRARTNG*
Ga0070744_100007973	F097357	N/A	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVISKRTF*
Ga0070744_100007974	F033435	GGAG	LSNSIFDSIPKLEGRPNHVVDIERFIGAPGSFTFREPKASDLFPRPEVQKALKIAFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSDIYLYVVADFAKAFPIDFTAAVDEVPND*
Ga0070744_100007976	F031872	GAGG	MVESLVVDEWIFDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQTDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNRQTVNSTTPVFFLNRASVSSSVDVSQDGRVDNGISQLYIATITPEV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070744_10000797

Overview

Ecosystem & Geography

Associated Families

Sequences