Scaffold Ga0070744_10000505

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000505
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11267
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F026563	Metagenome	197	Y
F035769	Metagenome / Metatranscriptome	171	Y
F092068	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000050516	F026563	GGAG	MTEKVELHCTQDDDGTWMVWFPHPLGGMDVLETFDNETDARAFHKDQVDSAEI*
Ga0070744_100005053	F092068	AGG	MTEKKNPNPFINLANEAKKKNTPIINGKKTEQKAPKPSKGFGGSSVVRRTGRGG*
Ga0070744_100005057	F008244	AGGAG	MFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTALNGFIDAQSKYTKQAADAGMQSMMSLGMIFTSKDFYTEMGDQVKAMVPAFNIAKSAKSTKAK*
Ga0070744_100005058	F035769	AGG	MNKILGMLLVFLGFSTDTYGTELEKYIVSRNPKDAGDIERLTYEFHRKQSDWRFL*