Scaffold Ga0100232_105931

Overview

Basic Information

• Taxon OID: 3300006477
• Scaffold ID: Ga0100232_105931
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3644
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 → Alloprevotella sp. oral taxon 473 str. F0040 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072446	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100232_1059313	F072446	GGA	MSSKLHNLRSFTPRHIHYQNRSGLGMTTGPKHSTTNLTIPLRIYKLGDTLLKNIPPMKKLLFLLSSLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPERTTYRVPVIPRSVEDRTKKEYNDMELGKEAHLVFRATVHGDTINRHKKGLKALSLQLNRLTETSLGTSPVLCGVKSIEAVGIAENGNTYDLRAEMKLRIRDYFGRVKYRSSGIVTLNCENTESMTAKYVVPLGSIREDELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYEREATYFTTLWPLPDYKYNEREL*