Scaffold Ga0078977_101990

Overview

Basic Information

• Taxon OID: 3300006409
• Scaffold ID: Ga0078977_101990
• Source Dataset Name: Viral communities from the deep bioline of CORK borehole observatory U136A, on the Juan de Fuca Ridge Flank, Pacific Ocean - passive in situ filtration, Fraction 20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1100
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Viruses Inhabiting Crustal Fluids Of The Juan De Fuca Ridge Flank

Source Dataset Sampling Location

• Location Name: Juan de Fuca Ridge Flank, Pacific Ocean
• Coordinates
  • Lat. (^o): 47.750184
  • Long. (^o): -127.740187

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105221	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078977_1019902	F105221	AGG	MAVTLYYKGFDHTNSSDVEEEVTTITSTEAEPKLIKRVVVVQRLANDTNLYVYLEREKILDAIAIESSPVGNDPWSFPIDFKLPLGQTLTVKLKNQTAGSNGGVVGYIEYEITE*