Scaffold Ga0068676_1144001

Overview

Basic Information

• Taxon OID: 3300006359
• Scaffold ID: Ga0068676_1144001
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005028	Metagenome / Metatranscriptome	414	Y
F008499	Metagenome / Metatranscriptome	332	Y
F085751	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068676_11440011	F085751	GGAGG	MSDAIAWIIAFGVIFALVNSNAADGILSALDLSDNLKRAVDWARGVRGVPAGVSAACFFILAYVFGALAYRYDLVPTWRFIQPVANDVLATGAEWL
Ga0068676_11440013	F005028	GAGG	MRDDDLRAAMQFFAGRLRGAELDPTRLLRWTRHKLRNDAQSVAELMLTVGYRATYIRYFLRYHIRNVDPETDSEDVVLVVADLQSAAKKLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0068676_11440015	F008499	AGGA	MKSRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALLQTVDRAARFERIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKEKKNE*