Scaffold Ga0099954_1057107

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1057107
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3241
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F023367	Metagenome / Metatranscriptome	210	N
F030123	Metagenome / Metatranscriptome	186	N
F103420	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_10571073	F001026	AGGAGG	MALHTLVLDDLELTALITHLEGQNEIMCESRLNCSNPSETPDREEVLLNLVYEKAFTIGWDAHINPKVDFNLHQNEDRIYKYK*
Ga0099954_10571074	F030123	AGGA	MSAISEDGMDKWLDDAYPSLDKRKANLIYEIASLINDDPLSAPVLIEELVEIMFDEQIDHIEDVIVNHFGVEVYPE*
Ga0099954_10571076	F023367	GGAGG	MTKKKFIFEEKFIGYAEVEIYAENEEDARLQFQNGNYQYYDVSDYTEGHELISVKEEEPVNYYQGV*
Ga0099954_10571079	F103420	N/A	MTHTGKISKYWNQWYSIIKEDAPELLDEFILDTAKRYGVSRSYIESEFIT*