NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103420

Metagenome / Metatranscriptome Family F103420

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103420
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 49 residues
Representative Sequence MTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT
Number of Associated Samples 55
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 20.79 %
% of genes from short scaffolds (< 2000 bps) 76.24 %
Associated GOLD sequencing projects 50
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Predicted Viral (42.574 % of family members)
NCBI Taxonomy ID 10239 (predicted)
Taxonomy All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(28.713 % of family members)
Environment Ontology (ENVO) Unclassified
(89.109 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(98.020 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1ACM55_10149243
2ACM6_10007765
3GOS2239_10226553
4GOScombined01_1022777253
5JGI25127J35165_10639411
6JGI25127J35165_10670121
7Ga0069134_1579732
8Ga0066830_100356563
9Ga0066830_100687922
10Ga0066835_101360443
11Ga0066840_100078643
12Ga0066840_100678172
13Ga0066840_100860462
14Ga0066840_101037052
15Ga0066840_101137722
16Ga0066840_101157973
17Ga0066840_101391631
18Ga0066377_100619545
19Ga0068468_11026975
20Ga0068468_11475171
21Ga0068486_13566221
22Ga0099675_10223104
23Ga0099675_103255419
24Ga0099675_10377828
25Ga0099675_103778311
26Ga0099675_10745991
27Ga0099675_11037871
28Ga0099675_14374222
29Ga0099675_15210293
30Ga0099693_103633121
31Ga0099693_10399752
32Ga0099693_12410787
33Ga0099693_12447948
34Ga0099693_14413941
35Ga0099693_15224873
36Ga0099954_10571079
37Ga0099954_12696012
38Ga0099954_13005292
39Ga0099954_13470692
40Ga0099954_14679991
41Ga0115104_106992473
42Ga0115012_113179373
43Ga0160422_101025053
44Ga0160422_101795031
45Ga0160422_103865063
46Ga0160422_107852901
47Ga0160422_110884101
48Ga0160422_111660813
49Ga0160423_100555656
50Ga0163110_107008812
51Ga0163110_108325992
52Ga0163110_111579801
53Ga0163110_114091092
54Ga0163109_103355113
55Ga0163180_110335921
56Ga0163180_111726303
57Ga0163111_122943093
58Ga0181383_10261584
59Ga0181415_10228811
60Ga0181427_10102933
61Ga0181425_10486853
62Ga0211701_10226822
63Ga0211627_100113515
64Ga0211700_10034294
65Ga0211533_10026286
66Ga0211619_10109794
67Ga0211474_10038765
68Ga0211703_101511831
69Ga0211651_100554503
70Ga0211472_104721451
71Ga0211472_104753643
72Ga0211699_102800253
73Ga0211516_100463144
74Ga0211580_102251593
75Ga0211565_100293126
76Ga0211558_101068953
77Ga0211638_101958373
78Ga0211638_103134811
79Ga0211638_105317621
80Ga0211548_100193991
81Ga0211713_100225893
82Ga0211713_101822653
83Ga0211475_100758881
84Ga0211614_101456192
85Ga0211614_101531285
86Ga0224906_10409273
87Ga0209348_100171519
88Ga0209348_10512433
89Ga0209348_11647332
90Ga0209348_12259021
91Ga0209232_10823382
92Ga0209645_10225165
93Ga0208763_10073452
94Ga0208405_10068633
95Ga0208405_10256202
96Ga0208405_10464213
97Ga0183748_11169473
98Ga0183826_10576521
99Ga0183826_10615962
100Ga0310343_105095743
101Ga0310343_112132583
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 80.00%    β-sheet: 0.00%    Coil/Unstructured: 20.00%
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5101520253035404550MTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFITSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
78.2%21.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Seawater
Seawater
Marine Plankton
Marine
Surface Seawater
Seawater
Marine
Surface Seawater
Marine
Marine
Seawater
23.8%20.8%6.9%5.9%28.7%5.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ACM55_101492433300001829Marine PlanktonMTHTGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYI
ACM6_100077653300001832Marine PlanktonMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIETEFIT*
GOS2239_102265533300001962MarineMTHTDNKVSKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETE
GOScombined01_10227772533300002040MarineMTHTDNKVSKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT*
JGI25127J35165_106394113300002482MarineMTHTGSKVHKYWNQWYHIIEEDAPELLDEFIMETAKRYGVSRSYIEKEFIT*
JGI25127J35165_106701213300002482MarineMTHTGNKVSKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0069134_15797323300004831Surface SeawaterMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRTYIESEFIT*
Ga0066830_1003565633300005433MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT*
Ga0066830_1006879223300005433MarineMTHTGNKVSKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT*
Ga0066835_1013604433300005606MarineMTHTDNKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT*
Ga0066840_1000786433300005608MarineMTHTSKVHKYWNQWYSIIQEDAPELLDEFIMDTAKRYGVSRSYIEREFIT*
Ga0066840_1006781723300005608MarineMIHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0066840_1008604623300005608MarineMTHTGNKVSKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRKYIESEFIT*
Ga0066840_1010370523300005608MarineMTHTGNKVSKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRQYIETEFIT*
Ga0066840_1011377223300005608MarineMTHTGSKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0066840_1011579733300005608MarineYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT*
Ga0066840_1013916313300005608MarineMTHTGKISKYWNQWYSIIKEDAPELLDEFIRDTAKRYGVSRTYIESEFIT*
Ga0066377_1006195453300005934MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT*
Ga0068468_110269753300006305MarineMTHTGKVHKYWNQWYSIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT*
Ga0068468_114751713300006305MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRQYIETEFIT*
Ga0068486_135662213300006329MarineMTHTVKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSR
Ga0099675_102231043300006334MarineMTHTGKVHKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEREFIT*
Ga0099675_1032554193300006334MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0099675_103778283300006334MarineMTHTGKVHKYWNQWYSIIEEDAPELLDEFIMDTAKRYGVSRKYIETEFIT*
Ga0099675_1037783113300006334MarineMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0099675_107459913300006334MarineMIHTGKVHKYWNQWYSIIKEDAPELLDEFIRDTAKRYGVSRSYIES
Ga0099675_110378713300006334MarineMTHTGKVHKYWNQWYSIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEF
Ga0099675_143742223300006334MarineMIHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT*
Ga0099675_152102933300006334MarineMIHTGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEREFIT*
Ga0099693_1036331213300006345MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRRYIETEFIT*
Ga0099693_103997523300006345MarineMIHTGKVNKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEREFIT*
Ga0099693_124107873300006345MarineMTHTGKVHKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT*
Ga0099693_124479483300006345MarineMTHTGKVHKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0099693_144139413300006345MarineMIHTGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT*
Ga0099693_152248733300006345MarineMIHTGKVHKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0099954_105710793300006350MarineMTHTGKISKYWNQWYSIIKEDAPELLDEFILDTAKRYGVSRSYIESEFIT*
Ga0099954_126960123300006350MarineMTHTGKVHKYWNQWYSIIQEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT*
Ga0099954_130052923300006350MarineMTHTGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0099954_134706923300006350MarineMIHTGKVHKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEREFIT*
Ga0099954_146799913300006350MarineMTHTGKVHKYWNQWYHIIEEDAPELLNEFIMDTAKRYGVSRSYIEKEFIT*
Ga0115104_1069924733300009677MarineKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRTYIESEFIT*
Ga0115012_1131793733300009790MarineVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0160422_1010250533300012919SeawaterMTHTDNKVSKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT*
Ga0160422_1017950313300012919SeawaterMTHTGNKVHKYWNQWYHIIEEDAPELLPQFIEDTAKRYGVSHKYIESEFIT*
Ga0160422_1038650633300012919SeawaterMTHTGNKIHKYWNQWYHIIEEDAPELLPQFIQDTAKRYGVSHKYIESEFIT*
Ga0160422_1078529013300012919SeawaterHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0160422_1108841013300012919SeawaterMTHTDNKISKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT*
Ga0160422_1116608133300012919SeawaterWNQWYHIIEEDTPELLDEFIRDTAKRYGVSRSYIEKEFIT*
Ga0160423_1005556563300012920Surface SeawaterMTHTGNKVHKYWNQWYHIIEEDAPELLEEFIRDIAKRYGVSRSYIEKEFIT*
Ga0163110_1070088123300012928Surface SeawaterMTHTDNKVHKYWNQWYHIIEEDAPELLEEFIMDTAKRYGVSRSYIEKEFIT*
Ga0163110_1083259923300012928Surface SeawaterMTHTDNKVHKYWNQWYHIIEEDAPELLPQFIEDTAKRYGVSHKYIESEFIT*
Ga0163110_1115798013300012928Surface SeawaterGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT*
Ga0163110_1140910923300012928Surface SeawaterMTHTGNKVHKYWSQWYHIIEEDAPELLPQFIDDTAKRYGVSRKYIESEFIT*
Ga0163109_1033551133300012936Surface SeawaterMTHTDNKVHKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIESEFIT*
Ga0163180_1103359213300012952SeawaterMTHTGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRTYIESEFIT*
Ga0163180_1117263033300012952SeawaterMTPIGKISKYWNQWYSIIKEDAPELLDEFIRDTAKRYGVSRTYIESEFIT*
Ga0163111_1229430933300012954Surface SeawaterMTHTGNKVHKYWNQWYHIIKEDAPELLPQFIEDTAKRYGVSHKYI
Ga0181383_102615843300017720SeawaterMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIES
Ga0181415_102288113300017732SeawaterMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIESEFIT
Ga0181427_101029333300017745SeawaterMTPIGKISKYWNQWYNIIEEDAPELLDEFIRDTAKRYGVSRTYIESEFIT
Ga0181425_104868533300017771SeawaterMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRTY
Ga0211701_102268223300020242MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT
Ga0211627_1001135153300020250MarineMTPIGKVSKYWNQWYNIIEEDAPELLDEFIRDTAKRYGVSRTYIESEFIT
Ga0211700_100342943300020251MarineMTHTGKVHKYWNQWYSIIQEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT
Ga0211533_100262863300020265MarineMTHTGKVHKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT
Ga0211619_101097943300020288MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIET
Ga0211474_100387653300020296MarineMTPIGKISKYWNQWYSIIEEDAPELLDEFILDTARRYGVSRTYIESEFIT
Ga0211703_1015118313300020367MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRKYIETEFIT
Ga0211651_1005545033300020408MarineMTHTGSKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT
Ga0211472_1047214513300020409MarineMIHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT
Ga0211472_1047536433300020409MarineYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT
Ga0211699_1028002533300020410MarineMIHTGKVHKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT
Ga0211516_1004631443300020413MarineMTPIGKISKYWNQWYNIIEEDAPELLDEFIRDTARRYGVSRSYIESEFIT
Ga0211580_1022515933300020420MarineMTHTGKVHKYWNQWYSIIQEDAPELLDEFIMDTAKRYGVSRSYIEREFIT
Ga0211565_1002931263300020433MarineMTHTDNKVSKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT
Ga0211558_1010689533300020439MarineMTHTGKVHKYWNQWYSIIEEDAPELLNEFIMDTAKRYGVSRSYIEKEFIT
Ga0211638_1019583733300020448MarineMTHTSKVHKYWNQWYSIIEEDAPELLDEFIIDTAKRYGVSRSYIEKEFIT
Ga0211638_1031348113300020448MarineMTPIGKISKYWNQWYSIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT
Ga0211638_1053176213300020448MarineMTQTGKVHKYWNQWYSIIEEDAPELLDEFIQDTAKRYGVSRSYIEKEFIT
Ga0211548_1001939913300020454MarineFIMTPIGKISKYWNQWYSIIKEDAPELLDEFIRDTAKRYGVSRTYIESEFIT
Ga0211713_1002258933300020467MarineMTHTGKISKYWNQWYSIIEEDAPELLDEFIMDTAKRYGVSRSYIETEFIT
Ga0211713_1018226533300020467MarineMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT
Ga0211475_1007588813300020468MarineMTPIGKISKYWNQWYSIIEEDAPELLDEFIRDTARRYGVSRTYIESEFIT
Ga0211614_1014561923300020471MarineMTHTDNKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRKYIETEFIT
Ga0211614_1015312853300020471MarinePIGKISKYWNQWYSIIEEDAPELLDEFILDTAKRYGVSRTYIESEFIT
Ga0224906_104092733300022074SeawaterMTPIGKISKYWNQWYNIIEEDAPELLDEFIRDTAKRYGVSRSYIESEFIT
Ga0209348_1001715193300025127MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIESEFIT
Ga0209348_105124333300025127MarineMTHTGNKVSKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT
Ga0209348_116473323300025127MarineMTHTGSKVHKYWNQWYHIIEEDAPELLDEFIMETAKRYGVSRSYIEKEFIT
Ga0209348_122590213300025127MarineMTHTDNKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT
Ga0209232_108233823300025132MarineMTHTGKISKYWNQWYSIIKEDAPELLDEFIRDTAKRYGVSRTYIESEFIT
Ga0209645_102251653300025151MarineMTHTGNKVSKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT
Ga0208763_100734523300026136MarineMTHTGNKVSKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRQYIETEFIT
Ga0208405_100686333300026189MarineMTHTSKVHKYWNQWYSIIQEDAPELLDEFIMDTAKRYGVSRSYIEREFIT
Ga0208405_102562023300026189MarineMTHTGSKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRSYIEKEFIT
Ga0208405_104642133300026189MarineMTHTGNKVSKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRKYIESEFIT
Ga0183748_111694733300029319MarineMTHTGKVHKYWNQWYHIIEEDAPELLNEFIMDTAKRYGVSRSYIEKEFIT
Ga0183826_105765213300029792MarineKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFIT
Ga0183826_106159623300029792MarineMTHTGKVHKYWNQWYHIIEEDAPELLDEFIMDTAKRYGVSRSYIEKEFITXLFL
Ga0310343_1050957433300031785SeawaterMIHTGKVHKYWNQWYHIIEEDAPELLEEFIRDTAKRYGVSRKYIETEFIT
Ga0310343_1121325833300031785SeawaterFFMTHTGKVHKYWNQWYHIIEEDAPELLDEFIRDTAKRYGVSRQYIETEFIT


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