Scaffold Ga0099694_100042

Overview

Basic Information

• Taxon OID: 3300006348
• Scaffold ID: Ga0099694_100042
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44436
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (91.07%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099694_10004232	F074985	AGGAGG	MELTDGGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRVLEYRRLYDVDTENAVLFTINTYPQGNILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKRTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYARRTTKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099694_10004233	F036281	GAG	MFSLIRVSEGPVDIHELRSRYLGKLKTEDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAQEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0099694_10004234	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKK*
Ga0099694_10004237	F043991	GAG	MSKKTPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0099694_10004239	F071329	AGGA	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0099694_10004247	F067847	AGGA	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL*
Ga0099694_10004251	F081456	AGGAG	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAE*