Scaffold Ga0068493_10442660

Overview

Basic Information

• Taxon OID: 3300006341
• Scaffold ID: Ga0068493_10442660
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1406
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F017906	Metagenome	238	Y
F082825	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_104426601	F082825	N/A	MATWMVGCETSMMGCYGHWVKGPGHHRGTRTLLKDAKLPYYQCVDENNKGTNLKERR
Ga0068493_104426602	F017906	AGCAG	LSAHINSHIMDTCEIEEGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDDMIREIKSFPE*
Ga0068493_104426604	F007608	AGGAG	MSQENKYEKLPNSMYPKVRQQVTDRIATFEKVIEEHAVAQREALKLVYEQLEEAKKDLQYLDEVN*
Ga0068493_104426605	F006364	AGGAG	MEREIDNDTRKMRIINYLDYMDDKSLREISVALYNLSIRRREVKKQKELVNESGK*