Scaffold Ga0068503_10537323

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10537323
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1441
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009367	Metagenome / Metatranscriptome	319	Y
F051204	Metagenome	144	N
F099439	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_105373231	F051204	GAG	MKIKIHSKYVDAKLKAAIHSMCGYALARLGISNRITKNLNLTIHMGHHSNEGESRVAKNANRYRPRDFKVIVDHHRAEIDDYNRTRTNTEWGHMILRTLAHELVHVKQYLVGDLSWRDKGMLWKGVMFAPEYLTDQLGTPYEVEAYGREKGLL
Ga0068503_105373234	F009367	N/A	MKEVHSQLVDVVLLTHEDGSTMLCRGGEDAVRKFWNLWPIVKAEFTGEKQLLQTIDADEIDQPYIPTTLM*
Ga0068503_105373235	F099439	N/A	MRQFQVDYETTLPPWRYGHEEIEAEDLDAAKEKFCSKHEAARLLKVYMVNNNNSGKP*