Scaffold Ga0099675_1020743

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1020743
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1189
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007722	Metagenome / Metatranscriptome	346	Y
F013311	Metagenome / Metatranscriptome	272	Y
F058285	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_10207431	F007722	N/A	DIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKNNIGG*
Ga0099675_10207432	F013311	AGGAGG	LAFLGDFGKFFGLGSSKEVLGDVGGTIGGIVGLEGAGRRAGEFIGQATSSIGGGSNVNLSPLSTADQALEQSAVSVSQRGDLPQETSQMLGTTGAPVMSAGFGALPQALQGLRAVAPKITQFFGGTTGAVATGVGTGVAVNMLSGTGMSRERPVLTQSRRNKARVRQLVNFMGIPGAAQFLSQQSGITVTENDIVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRASSTTLIKN*
Ga0099675_10207433	F058285	AGGAGG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAY