Scaffold Ga0068500_1125146

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1125146
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4248
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015150	Metagenome / Metatranscriptome	257	Y
F020920	Metagenome / Metatranscriptome	221	Y
F050672	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_11251465	F020920	AGGA	MAGITHGSIKASSKKREPIRFTTVSTPIKYLLLEVPSDNKGDVYIGGPTVAKNNAPVLAKGTPREFTFRHDVKEAPGDLADFYVHFGHKGDVVNYLAITI*
Ga0068500_11251467	F015150	AGG	MHPLGWMFKYFFASIVGAATVVQAVKIARFELGNTVEGLIFRLGVHPDKYKRDDD*
Ga0068500_11251468	F050672	GAGG	MPNDPIIIGIAVIAIAVLGYTAINGMMNGAKSSNKDKPNKGA*