Scaffold Ga0068486_1012358

Overview

Basic Information

• Taxon OID: 3300006329
• Scaffold ID: Ga0068486_1012358
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35400
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F064787	Metagenome	128	Y
F084340	Metagenome / Metatranscriptome	112	Y
F095604	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068486_101235825	F064787	N/A	MSDRLDRLINSSAQDLLGKGSEMYMSVKSAILDHDQKELLKKALFFYQKDACEHHGTVPDLDKGIIESIIERLHMKHI*
Ga0068486_101235834	F084340	GGAG	LTNINIKEIEHPAQEHQQDINACVHHIRDAVQDYVESEVLTPGEFVNCVRTALSDGINYHTNRAELLKNAQKLLTNNITSKEFVDYKL*
Ga0068486_101235835	F095604	N/A	MNEADEAARALRKLQELTNKYSNLEMDADELNQSISERINATEELKDIIAKATQARKDRESRRS*
Ga0068486_101235844	F005533	AGGAG	MSYTKNEVALETFISNTNNQFYYIGEEDDKVAPIDVKKFTEYCVAFIDSLEIER*