Scaffold Ga0068475_1049122

Overview

Basic Information

• Taxon OID: 3300006318
• Scaffold ID: Ga0068475_1049122
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2897
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068475_10491221	F060975	N/A	VARNSEKFNKPKTIRDRKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED*
Ga0068475_10491222	F097503	GAGG	MDCDTFDGIVEMFEQRMIEGCIANEFKCTYNIEKGEFIAEIDGKYYVAMTREKK*
Ga0068475_10491226	F041251	N/A	MGLWCGNQGSYCRTGALKEYSIDDVTAIAEAIKSGERVENDIGTVIDGFFWFPDEMQWAAQWQKDEEQDTPNGYFAMLLNPDVFEDTEDEDEIMAGIEYWWHRSQIYSAAYIINNKPVIASKYTEDIAADSLRDLINMQNDVKEAFKAEGIKVGLDAAPKDIWMIVRTTAQNIHDNVRGIH*