Scaffold Ga0068471_1609504

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1609504
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2021
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F021181	Metagenome / Metatranscriptome	220	Y
F034348	Metagenome / Metatranscriptome	175	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_16095041	F034348	AGGAG	MEQKQTAKAPMSVRVTEKTMPLTKWFAEQYYQTHALMSKDARYKSLPPYNQTSCIATVMIATNGALDSDRAKKRAEKLIEISNKDQAKTA*
Ga0068471_16095045	F019555	GGA	MFRVILKNKFKEREIDLSIAVKVMYHQKFTGSIQSEHIKWWKRYWIKPIMLEILYPKKGWIQLVKIFREGKPSIRVITTPTSSSKRELLVYKQLYGEEVQHEQKRKKKLEQFRNKQKDMQTTNIAPNME*
Ga0068471_16095046	F068133	AGGAG	MQLAIDVFTDMMTSKEIYIIIGGCIIMWIALEWMDKNV*
Ga0068471_16095047	F021181	AGGA	MRWLILIQLLAGFVLAFLGVIIMFHLYEVWLGLGITLVGMYAVLRAVHRSHNATSN*