Scaffold Ga0068471_1448832

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1448832
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1385
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F056674	Metagenome / Metatranscriptome	137	Y
F063766	Metagenome	129	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_14488322	F056674	AGGAG	MNERIKVKEAIKILRKGMPKFKQHGQYQMSLGGLIKALQKERTGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEDPITVAEFLKECEDAVGKSFITADHFDEFYKDYVMQIGAPLWISTLGQASQKGIVDLVPTDGYIKLVTKTIEEVEVVEDGSE*
Ga0068471_14488323	F063766	GGAGG	MALNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT*
Ga0068471_14488324	F105355	GAGG	MEALNSCDENDKLTILLNIRQGTQSTTYSVSNLPDWYDMLGIFAIYGVVAMTIFYSGLWIASKYKGEQK*
Ga0068471_14488325	F052655	AGGAG	MTVLILVTGLVLGMFTYQPSWFDTRPHYYHLTYNSKSECQEAREMVKNKGTVCTDKHEMYKTK*