Scaffold Ga0068470_1092720

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1092720
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4240
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051207	Metagenome / Metatranscriptome	144	Y
F084353	Metagenome / Metatranscriptome	112	N
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_10927207	F051207	N/A	MEGFIFKYIHTGSMASSIYIYTNRNDYDNLYKGKTEAYTYETPILDFFIRPTEGYDVADSIPTNRLWVVTQTDKVKMRPSLERSIVHFTNGTCFDFCCGNELQVEKEKVFYDPINNMLEFYPRRFRKPLLSLKVDKVVGGKPNKKSKIRFKNKYYDMTHDRLNLFV*
Ga0068470_10927208	F103414	AGG	LSSFIFRAAGFNEIVRLLKETNTKLGNIEKLMEFLLSPPDLKKYKKGMSFNDLPRKPFSDQA*
Ga0068470_10927209	F084353	N/A	MDWKRKKTIVPRCDCSIHDVISGIVEYLIITPIFAIGYLTVTIPWMLFVIGLDADQFANFVWQSVMVDLVVAYPLAKLVMKLKPRIEKLAKLGH*