NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068469_1105685

Scaffold Ga0068469_1105685


Overview

Basic Information
Taxon OID3300006306 Open in IMG/M
Scaffold IDGa0068469_1105685 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2666
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013700Metagenome269Y
F026709Metagenome197N
F043453Metagenome156N
F058216Metagenome135Y
F079222Metagenome116Y
F096041Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0068469_110568510F096041GGAGMNKNKEYIYITRTMKINVPAIYCQDAIDKIQAMKKQDLIPKELGFLYTRCRVRDRGKDKYGL*
Ga0068469_110568511F013700GAGGMDYKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIANKLEEDVDENNSHLASKYYEPPETNEDDDEV*
Ga0068469_11056853F043453AGGAGGMSEQIKIVVDKQNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKQFDINLKEQKNIWKE*
Ga0068469_11056855F026709GGAMYIILIKDNHRYRIYTNEIFTLEDEALDYAKRSKFKKNIKWKVEEFDYKYFKS*
Ga0068469_11056857F058216AGGAGGMNKTIGQLIKEDHWSTRRLAVAMRITQADLKGVKWEKSNKPYKKSKKKSYLW*
Ga0068469_11056859F079222AGGAGGMNKNSYTVHNEEGRLVASDELTVLELLENNGYLINISESEAKQLRIENGVDDE*

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