Scaffold Ga0068469_1105685

Overview

Basic Information

• Taxon OID: 3300006306
• Scaffold ID: Ga0068469_1105685
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2666
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F026709	Metagenome	197	N
F043453	Metagenome	156	N
F058216	Metagenome	135	Y
F079222	Metagenome	116	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068469_110568510	F096041	GGAG	MNKNKEYIYITRTMKINVPAIYCQDAIDKIQAMKKQDLIPKELGFLYTRCRVRDRGKDKYGL*
Ga0068469_110568511	F013700	GAGG	MDYKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIANKLEEDVDENNSHLASKYYEPPETNEDDDEV*
Ga0068469_11056853	F043453	AGGAGG	MSEQIKIVVDKQNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKQFDINLKEQKNIWKE*
Ga0068469_11056855	F026709	GGA	MYIILIKDNHRYRIYTNEIFTLEDEALDYAKRSKFKKNIKWKVEEFDYKYFKS*
Ga0068469_11056857	F058216	AGGAGG	MNKTIGQLIKEDHWSTRRLAVAMRITQADLKGVKWEKSNKPYKKSKKKSYLW*
Ga0068469_11056859	F079222	AGGAGG	MNKNSYTVHNEEGRLVASDELTVLELLENNGYLINISESEAKQLRIENGVDDE*