Basic Information | |
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Taxon OID | 3300006306 Open in IMG/M |
Scaffold ID | Ga0068469_1105685 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2666 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013700 | Metagenome | 269 | Y |
F026709 | Metagenome | 197 | N |
F043453 | Metagenome | 156 | N |
F058216 | Metagenome | 135 | Y |
F079222 | Metagenome | 116 | Y |
F096041 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068469_110568510 | F096041 | GGAG | MNKNKEYIYITRTMKINVPAIYCQDAIDKIQAMKKQDLIPKELGFLYTRCRVRDRGKDKYGL* |
Ga0068469_110568511 | F013700 | GAGG | MDYKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIANKLEEDVDENNSHLASKYYEPPETNEDDDEV* |
Ga0068469_11056853 | F043453 | AGGAGG | MSEQIKIVVDKQNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKQFDINLKEQKNIWKE* |
Ga0068469_11056855 | F026709 | GGA | MYIILIKDNHRYRIYTNEIFTLEDEALDYAKRSKFKKNIKWKVEEFDYKYFKS* |
Ga0068469_11056857 | F058216 | AGGAGG | MNKTIGQLIKEDHWSTRRLAVAMRITQADLKGVKWEKSNKPYKKSKKKSYLW* |
Ga0068469_11056859 | F079222 | AGGAGG | MNKNSYTVHNEEGRLVASDELTVLELLENNGYLINISESEAKQLRIENGVDDE* |
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