Scaffold Ga0068469_1082810

Overview

Basic Information

• Taxon OID: 3300006306
• Scaffold ID: Ga0068469_1082810
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 906
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F021181	Metagenome / Metatranscriptome	220	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068469_10828101	F019555	GGA	MFRIILKNKFKERKIDLSIAVKVMYHQKFTGSIQSEHIKWWKRYWIKPIMLEILYPKKGWIQLVKIFREGKPSIRVITTPTSSSKRELLVYKQLYGEEVQNEQKRKKKLEQFRNKQKNMQTTNIAPNME*
Ga0068469_10828102	F068133	GGA	MQLAIDVFTDMMTSKEIYIIIGAAVIMWIALEWMDKDV*
Ga0068469_10828103	F021181	AGGA	MRWLILIQLLAGFVLAFLGVIIMFHLYEVWLGLGITLVGFYAVIRATQRDENATSN*