Scaffold Ga0082206_138237

Overview

Basic Information

• Taxon OID: 3300006225
• Scaffold ID: Ga0082206_138237
• Source Dataset Name: Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 99 accuracy
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Mixed Substrate Biogas Reactor → Biogas Reactor Microbial Communities From Swedish University Of Agricultural Sciences, Alnarp, Sweden, And As, Norway That Are Enriched On Cellulose

Source Dataset Sampling Location

• Location Name: Alnarp, Sweden
• Coordinates
  • Lat. (^o): 59.8152338
  • Long. (^o): 17.6620518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082206_1382372	F022008	AGGA	MTMNDVEMLREALNDLSKQVQTLSEDNRASFGRIYDRLTKIETQMSERECQFKRYEKTIENHETRIRLVEGELGTLRDVPERLWHVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE*
Ga0082206_1382373	F103496	AGG	MQIDDRIRRLPLTKLIALCFTIFTCVLIVLDVTSLCTLTERSADLLKWLGSTIIVGYFGKSAYEHKVNSDAGRRIDQ*
Ga0082206_1382374	F066897	AGGAGG	MSNKTLWLIIIVVILLSAIFLWYNHTSTQETLIKAQETIEETKQALRESEEALKKIDKIAQEIKDVSISAEKAGDEYVKEIRFVSDDEFLNVVNEYSTLMGRTSGVKDGESFYQVIPLLIL*