Scaffold Ga0075446_10019533

Overview

Basic Information

• Taxon OID: 3300006190
• Scaffold ID: Ga0075446_10019533
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2279
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002374	Metagenome / Metatranscriptome	566	Y
F004882	Metagenome / Metatranscriptome	420	N
F058285	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075446_100195331	F058285	AGGA	MPLVQKTLTLTAGATSDNILANTNYEFVDGNVRIRVASACDSAGTSATADTFLNVSVNNAEFSKDVSVPALV
Ga0075446_100195333	F002374	N/A	MISNPNMDHFLLYTSIILASVTFFLCLYACARVGKVLNSVKGLEWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYVNKQQSNVTNINNKGIGG*
Ga0075446_100195335	F004882	N/A	DSAGTSATADTFLNVSVNNAEFSKDVSVPALVTGSPFGVLNGTYVNNDLITTGAQRNRVLVRFTNDTAQTRTIRCGIFIGG*