Scaffold Ga0075443_10023369

Overview

Basic Information

• Taxon OID: 3300006165
• Scaffold ID: Ga0075443_10023369
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2069
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075443_100233692	F053549	GAG	MKVGDLVRWENVLYDSMDHHREEHGLVVQMSRTGHDTESAQVLFNDGETWWLDTQKLVVISESR*
Ga0075443_100233694	F010950	GGAG	MMNIWVVRNTCLYSNETYLSTHITEKGALMTAIQVVREDLISGYDVDEIEDMRPGLPHHPGEDLMQYSSEQLRGIVDDWWIYSMDINEHGQYEIHQTQVIG*
Ga0075443_100233695	F005547	N/A	MSKEHGNSLGRKESIEGDSMMKVWVMQGSYEGEMFSSVHLTQKGCALACISDIIEFHGIDDDETALSVMHSSYTFTDDEKEIKEATKPFEWDQEKLKEMTSEQLWKVFSDWCEISWDRMSDRSYNLDSNQVEIQA*
Ga0075443_100233698	F030886	AGGA	MSYHDYTPHYNKTGIEVVNPLIRIERKLKRVQEVLDNISDNSILTAIDLKIKIQKVIDEDR*