Scaffold Ga0007828_1003210

Overview

Basic Information

• Taxon OID: 3300006128
• Scaffold ID: Ga0007828_1003210
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3620
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F038106	Metagenome	166	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007828_100321010	F006060	AGG	MLKFENIAKVGDIIRAYDFKPCAGRDDAFIEGVVENANCNEPGFNCFKITVTADKFHKFETKPKKENRVGRIMFVPHETGFMEFDHRIINLSKV*
Ga0007828_100321012	F068426	AGGA	MNKWEFVVSELKSLQQGFQDHQAIAELFVEQKLLYGYNIIKSKDQVYKR*
Ga0007828_10032102	F034813	AGGAG	MSYDSDYESVYMVEFESGRTIHVQFFDVEEVKEYCADNHAGDVIKSIYKEVYCNFAEAE*
Ga0007828_10032104	F083677	AGG	MSHFDGMALDELQSYFSDFHKDYYGFRPRFATHEEWNNRDWLVEHIDGIHDAMDAMKKTPEGRKQLRAQGWVIDEREFL*
Ga0007828_10032109	F038106	AGG	MNLSYKQKEVIMQEMFKMHKSPAGFSSIYKGAPVYNYEAIKQFIDFTKYYVMFRGPRPHRGYSTRKRDAHSFDVYKRSERDTIRIRAELEGFKRGVKWAKDNV*