Scaffold Ga0081982_130220

Overview

Basic Information

• Taxon OID: 3300006084
• Scaffold ID: Ga0081982_130220
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTD1200_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1104
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Water From Within Volcano Caldera → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.9988
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048174	Metagenome / Metatranscriptome	148	Y
F075867	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081982_1302201	F075867	GAGG	MNPALKPSTKHFLQYDTATFEHEGFKTLNGRISQLALEPRFWSVSVKVITENYEGTEKIKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0081982_1302203	F048174	GAG	MSDKGQSNNKDVQSHSEVVEALLKGEIERLKDDLDRLHRERDAFSRQCSVMAEENQQWEQDSKRLTWMIQNHGRVEFEFNANCYVTFIHKNEFKATLGSDDTRVEIDRAMEMCK*