3300006084: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTD1200_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300006084
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0121531 | Ga0081982
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTD1200_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35162592
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella montpellierensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Water From Within Volcano Caldera → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → volcano → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.9988
  • Alt. (m): N/A
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025488	Metagenome / Metatranscriptome	201	N
F048174	Metagenome / Metatranscriptome	148	Y
F058997	Metagenome / Metatranscriptome	134	N
F075867	Metagenome / Metatranscriptome	118	N
F076005	Metagenome / Metatranscriptome	118	N
F087089	Metagenome / Metatranscriptome	110	N
F101016	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0081982_102959	Not Available	544
Ga0081982_115150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	824
Ga0081982_130220	Not Available	1104
Ga0081982_154950	Not Available	535
Ga0081982_165178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella montpellierensis	548

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081982_102959	Ga0081982_1029592	F058997	LLDERIMIIYKGREMTVREACALMGIDCDDFMAWCKKFALQNYSYALNYYKRTLKFKK*
Ga0081982_111118	Ga0081982_1111181	F025488	MAYVSRGFIPQTSLAANLGFTRPMYIPAGNGTATALYDIVKVSTSGSTVDTAGVPAGLMGCVRVSDKDDVPCGVIVGFIADPDYLNQTYRSSSTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDT
Ga0081982_115150	Ga0081982_1151502	F101016	ANAEAKRLELQLRLMEVESKARLENAQVKKTEAEALKTMADVEVMYNDAQKRQADQLLEELTALPAALPTSEELLDEQSIDSGEGEYSGLPPMVEQSSDQGDDGAIDQRVDEPQQPNEPPQSIDIGEGTLPIGQGAGIDGGAGLQEPTNGDMQEGV*
Ga0081982_130220	Ga0081982_1302201	F075867	MNPALKPSTKHFLQYDTATFEHEGFKTLNGRISQLALEPRFWSVSVKVITENYEGTEKIKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0081982_130220	Ga0081982_1302203	F048174	MSDKGQSNNKDVQSHSEVVEALLKGEIERLKDDLDRLHRERDAFSRQCSVMAEENQQWEQDSKRLTWMIQNHGRVEFEFNANCYVTFIHKNEFKATLGSDDTRVEIDRAMEMCK*
Ga0081982_154950	Ga0081982_1549501	F076005	MKHFKVRVQYLNGIDFLFECDAVTAWQAGALARVAGRIAGMGGAMDVKETIVQEVSAM
Ga0081982_165178	Ga0081982_1651781	F087089	NNVQTIVFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVGGSQTYGRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHGVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKKNLAPSTIPVQDKK*