Scaffold Ga0081425

Basic Information
Taxon OID	3300006065 Open in IMG/M
Scaffold ID	Ga0081425_134151 Open in IMG/M
Source Dataset Name	Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5264
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5264

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.564833	Long. (^o)	-110.86325	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.564833

Long. (^o)

-110.86325

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081425_13415111	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPKTFAEFLESFKKFRDPDFPVYWIPWTIEEAVEELTGRKFGWHEDAFKDEWSYTGEFGFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVRAVEYFLRLVQQA*
Ga0081425_1341513	F092976	GGAGG	MMTVQEILHWKQELRRVLQEFLRKWKKCPKCGARWIDIAWDAESDHEWLIVECRSGHLFRADEEFWLFDYNGSGVYVPSEETETEVSAYASKGRKCVF*
Ga0081425_1341515	F088087	GAGG	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAGKAIEQFIAGGDE*
Ga0081425_1341516	F080678	GGAGG	MFVRKVDAKTIPIAEVYDDWERIWMGEKEIRRFLTYTGLSAPPYNLRVGHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
Ga0081425_1341519	F100012	AGGAGG	MDKEKVLQALKEAQAEYNIKDLDSFIKTAWEEGDVLQAQFVAETIERAVEILFERHFLWVHIVESEDCELWLPDGWYFFVAVHPETGQCLTFLNDPVYRWKSASFRARIRSAEDAVDAVMRLAELIEQNLKSRAVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0081425_134151

Overview

Ecosystem & Geography

Associated Families

Sequences