Scaffold Ga0066652_100116509

Overview

Basic Information

• Taxon OID: 3300006046
• Scaffold ID: Ga0066652_100116509
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2184
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001203	Metagenome / Metatranscriptome	748	Y
F057403	Metagenome	136	Y
F094086	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066652_1001165095	F094086	GGAGG	MTRDQMRDEHDRLQEVLEAHEARAVASSMPDHHDGLRQRIAGLALKLAEANPA*
Ga0066652_1001165096	F057403	GGAG	MDKTEAHAERTRLQHLLDAYEAGRLTHQDEDERGELKRDVTPDRADNVRARIARLDEVIAEADCANRD*
Ga0066652_1001165097	F001203	GGAGG	MSAENWHEERDRLVQLLDAIEAGDVSHIDQDHLRQLQATNPKNVAMLRDRLAKLNA