Scaffold Ga0066652_100106663

Overview

Basic Information

• Taxon OID: 3300006046
• Scaffold ID: Ga0066652_100106663
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2271
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012170	Metagenome / Metatranscriptome	283	Y
F077127	Metagenome / Metatranscriptome	117	Y
F089248	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066652_1001066632	F077127	N/A	VLSWIWIPVLYVLAFSLFGWLGGIPAAGDAIARWGRETADRRRCAVSPSS*
Ga0066652_1001066633	F012170	GGA	MATRTPLRDYERSRPEPSHGLLERAEEWAEETSLAPEGEPEEGVPWHAVALLLAALAVLIAVEITLAFGIAKLATGHAY*
Ga0066652_1001066634	F089248	AGG	MRVRILTAFSVVLLLSVGIATAAAARKQRFPASQQLCESYGGTFSTKANSSFFAPFYKKQGVLWTCNSYSGGSTASQAFVQSCAGDGGQATSTLDSGFATCWKNQPF*