Scaffold Ga0075023_100047227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075023_100047227

Scaffold Ga0075023_100047227

Overview

Basic Information
Taxon OID	3300006041 Open in IMG/M
Scaffold ID	Ga0075023_100047227 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1336
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania
Coordinates	Lat. (^o)	41.5935	Long. (^o)	-78.5142	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044083	Metagenome / Metatranscriptome	155	N
F071525	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075023_1000472271	F071525	GAG	MRMIRGDERGGVKKGKIMRRTVCAFTVATLICAARYETSHAAPIAPLTGIQAGSGNITLVSSHHYRRSHQYIVIPLTRDYGWWPQGQYRWFPFGLARWGYWCEPASYYRLSCGVGD*
Ga0075023_1000472272	F044083	GAG	VTVKPDPVITVINRYRAARNEVDKIAVREPMLPNGNPADETEEYAAWETASLKATDAVATAWTEVATTQPTTVPGAIALIDCYLEIWSERPAKLTYPEASRALRILRAFLRGTAQ*

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