NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075465_10005682

Scaffold Ga0075465_10005682


Overview

Basic Information
Taxon OID3300006037 Open in IMG/M
Scaffold IDGa0075465_10005682 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2232
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F009125Metagenome322Y
F013396Metagenome271N
F074549Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0075465_100056823F009125N/AMTSDNIRATLTAATPAAAMVSLSQINEVAGLVGTLLGIAFLLWRWRKQWKAGHVKNLDE*
Ga0075465_100056824F074549GGGGGMSLTDILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLAAAEKEAAWNAFTASQKTGDNTIVIPAGTWPWVGSIYVLVDAFRQLTRPGLTWAGFIFLTSVYFSASPEVRATMSPEIQFGSWTLIFWWVGARYNKSK*
Ga0075465_100056825F013396N/AVTLRRSLLLAVLALGLVVVLGLALRSERVLLAGLPTRVVVASEAEAWTLAGPSAVVVLGTGSMAPYIPAAPAGADPLRTVCALVVLVPGASYTDIKAGTLCIYVPVWAGRNVMHQAAQIDGKGWIMTGLGNKAYENKERVTAGNFVGIVARTYVWGK*
Ga0075465_100056826F005113GAGMTKEEHKNAIVTQLQQQSLNLLVDSLAAALAEIEQLKAAAADKPTP*
Ga0075465_100056827F003579N/AMTIPIAPYTMGSPAQPKIGTQFEVRYINYTGVTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDATFAAALAVNAGFELLP*
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