Scaffold Ga0075465_10000102

Overview

Basic Information

• Taxon OID: 3300006037
• Scaffold ID: Ga0075465_10000102
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14644
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F027779	Metagenome	193	Y
F057151	Metagenome / Metatranscriptome	136	Y
F077300	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075465_1000010213	F057151	GGA	MNNHQYFAQLNDDNVVIDVAVVTYEFMQENPERYLGQWVETFFNLPNKTYAGIGMIYDEITKDFYAPIPTPIPDETPNS*
Ga0075465_1000010215	F027779	N/A	MAVIPANPKIVGSKPYTGNNDGEAAGPRAGMDEWIRQAIKHGKGAFWNNGSWGVRMMRGSETSLSVHATGRAVDLSYRMSQQHQGANRKDACAFINIVLENANALGVECVLDYIGPFGRGWRCERQSWQKYTKETIHGVPGDWFHVEISPAMADNPNAVKQAFDRVFTEIPH*
Ga0075465_1000010217	F000722	N/A	MSDQPFNEIGITNETRKAMYPDNYTDKMGHAFKTMLDDIFRPMHIPRPDPVDHSILIDELEMMYEAHMTIGGQQNRFNASVLKAALNVIRAL*
Ga0075465_1000010218	F011919	N/A	MNDQMQMFHPSNGLEGYRERLVQRNTVTISPSAKPTSAAAALRALPRTGTYRKRIYDYLIQIGGATDEEIENALGISGNTVRPTRGSLVKDRLVVETDVERPTKSGNMAIVWMAL*
Ga0075465_1000010220	F077300	AGGA	MSNPNEQYDRLHDHCQAIARERDWYKSEVDRLTDELELAHEALRRQMP*