Scaffold Ga0075012_10312623

Overview

Basic Information

• Taxon OID: 3300006033
• Scaffold ID: Ga0075012_10312623
• Source Dataset Name: Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1066
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 40.0132
  • Long. (^o): -79.0717

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018913	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F048267	Metagenome / Metatranscriptome	148	Y
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075012_103126232	F048267	N/A	MTDKEWETALKNLNEGVKKWVNEEIDKIKYNVVKEIINRELKND*
Ga0075012_103126233	F032252	GAGG	MTEMKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGVLAKSKRSISMNDFIVVAER*
Ga0075012_103126235	F018913	AGCAG	MTNQQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGTNKVDFTDELDVMFNAGWDECLKEIDAICDELELL*
Ga0075012_103126236	F090316	N/A	MPDDLQREEELFFKALEEYKEKKSQEPTDKTTNTLPAVIAAVL*