Scaffold Ga0066651_10149367

Overview

Basic Information

• Taxon OID: 3300006031
• Scaffold ID: Ga0066651_10149367
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1223
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073197	Metagenome / Metatranscriptome	120	Y
F076134	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066651_101493671	F073197	N/A	PPHSPSPAQARQVCVARLQTGVVPAHCALEMHGTQIAAATSQTGVAPVQRVALVAEQTPQAPEAWQAGEAPPHSLSPPQPRQVCVLKLQTGVAPPHCAFDTHGTQIPPVV*
Ga0066651_101493672	F076134	AGCAG	VAPAQAVALVAEHWPQAPEGWQAGVAPPHSPSPAQPRQVCVPRLQIGVGPPHCAFDRQGTQVPAGA*
Ga0066651_101493674	F076134	AGG	LVAEHWPHAPDGSQAGVAPPHSPSAAQARQAWVPVLQIGVVPAHCAFATHGTQVPLVV*