Scaffold Ga0075470

Basic Information
Taxon OID	3300006030 Open in IMG/M
Scaffold ID	Ga0075470_10005886 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3786
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3786

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F043890	Metagenome / Metatranscriptome	155	Y
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100058862	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGMLLTYAINKFQSQFI*
Ga0075470_100058863	F002738	N/A	MSIDTYGLSTEQYQEFFEDNVRFAAELYLQTCNILTTKGVGSVDFKTVLDMYQEAVYQTNDDCRQYQKVNNPEAIKDVDLLGIYPSREEMMEEIKAINVKVEALVDYIARLVETTTDGLNGLAEAMDKDV*
Ga0075470_100058864	F043890	N/A	MQKTSSWATWNPNSINKLQIECIDEEDGSMTIRIDWDENDPDLQWWTDLGPKDQECFMIDALHEARACYVD*
Ga0075470_100058866	F002333	N/A	MSTQTLLQLNSAQACIYTRTNIRRAFQDFDDSCIAGIYVRDDDCLVVRDDGSEQTYNRSLIKTAYTTYTYRLKDFFSYLGPNYRGPSIWHNNAYILFKGWNYSHALGHLSSNAKLQAHWADKFIHVSDPGKVTTLLQSDQTDLGHLVAPDGLRLANRPIDLDSSLDDGTEQEPVFGEPYCSCGSFQRQLNNLFTFQEEIQGFKPWCIHLTWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPVDHISDGRFVLLYTNSGAQSPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ*
Ga0075470_100058868	F097198	N/A	MLQFEMGPEEAFWQEKMIRSINECNSVSELKEMATLLTKIATMRQVAIKGLVKDAMDLMHNQVDYDILNRLKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075470_10005886

Overview

Ecosystem & Geography

Associated Families

Sequences