Scaffold Ga0075470_10000613

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000613
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11436
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000061310	F002333	N/A	MSIQTQAKLNSAQALIYSRSNIRRAYQDFDDTTIAGIYLRSDHCVVVRHDGTEQIYDRSLIKTAFQQYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDPAKIKVLLQSDQTDLGHLVAPDGLRLPNRPLDMDSELDDVQEQQSSFGEPSCSCGSFQRQLSNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDTRNASPSGTPEKCVAWWYAPPSDHTSNGRFVLLHTKSGAQAPLGHWRTYKPQEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKAVIKKQ*
Ga0075470_1000061311	F043890	N/A	MLKPNSIDKLQVECIDEEDGSMTICIGWDETDPDLQWWTDLGPEGQECFMIDALYEACACYVD*
Ga0075470_1000061312	F002738	N/A	MSIDTYGLSSEQYEEFFEDNIRFSSQLYVKTCNIMSAEGAKNVDFKTILDLYQEAVYAANDDCRRYQKTNNPEVLKDTDLLGIYPSREEMLEEIKSVSAKVEALADYVTELIKVTTKGLEGVAESLVD*
Ga0075470_1000061313	F013517	N/A	MFESLFAAVLPVIKDLLWAAAGMLLSYALNKIQTQFN*
Ga0075470_1000061315	F001018	N/A	MAHITQAKLESLSVIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYAIAAHEDALERIKKEGDLITQAKRHHESQLNQLKNLLGWLRRSLPLDSNRIQGKNYEFVLSKKKELTVEITSDPEFWHTDERSKFCIQQEVTTTKQIVVRSMSGEVLSNRTEPKTKTETLPNLDAIRNAYQNGEHLPSGVKVEQQYSIRKNRLFSAKRMEPQTSEYFGEFLPELDSAE*